J3_6CHR_001

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAG*CGAAU*GA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CHR_001 not in the Motif Atlas

Geometric match to J3_3IGI_001

Geometric discrepancy: 0.2109

The information below is about J3_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_14360.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6CHR|1|A|U|170
6CHR|1|A|A|171
6CHR|1|A|G|172
*
6CHR|1|A|C|179
6CHR|1|A|G|180
6CHR|1|A|A|181
6CHR|1|A|A|182
6CHR|1|A|U|183
*
6CHR|1|A|G|302
6CHR|1|A|A|303

Current chains

Chain A

RNA (621-MER)

Nearby chains