J3_6CHR_002

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUCCCU*AGGAGG*UAUCG

Length

17 nucleotides

Bulged bases

6CHR|1|A|A|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CHR|1|A|C|360
6CHR|1|A|U|361
6CHR|1|A|C|362
6CHR|1|A|C|363
6CHR|1|A|C|364
6CHR|1|A|U|365
*
6CHR|1|A|A|378
6CHR|1|A|G|379
6CHR|1|A|G|380
6CHR|1|A|A|381
6CHR|1|A|G|382
6CHR|1|A|G|383
*
6CHR|1|A|U|402
6CHR|1|A|A|403
6CHR|1|A|U|404
6CHR|1|A|C|405
6CHR|1|A|G|406

Current chains

Chain A

RNA (621-MER)

Nearby chains