J3_6CZR_005

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1166

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6CZR|1|1A|C|744
6CZR|1|1A|A|745
6CZR|1|1A|G|746
*
6CZR|1|1A|C|778
6CZR|1|1A|G|779
6CZR|1|1A|A|780
6CZR|1|1A|A|781
6CZR|1|1A|C|782
*
6CZR|1|1A|G|806
6CZR|1|1A|A|807
6CZR|1|1A|U|808
6CZR|1|1A|G|809

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2