J3_6CZR_017

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

6CZR|1|1a|U|707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.3

Basepair signature

cWW-F-cWW-F-F-tWW-F-cWW-F

Number of instances in this motif group

5

Unit IDs

6CZR|1|1a|U|656
6CZR|1|1a|G|657
*
6CZR|1|1a|C|701
6CZR|1|1a|G|702
6CZR|1|1a|C|703
6CZR|1|1a|C|704
6CZR|1|1a|G|705
6CZR|1|1a|A|706
6CZR|1|1a|U|707
6CZR|1|1a|G|708
6CZR|1|1a|G|709
*
6CZR|1|1a|C|716
6CZR|1|1a|A|717
6CZR|1|1a|G|718

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1f

30S ribosomal protein S6

Chain 1k

30S ribosomal protein S11

Chain 1o

30S ribosomal protein S15

Chain 1r

30S ribosomal protein S18