J3_6CZR_026

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6CZR|1|1a|U|1222, 6CZR|1|1a|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6CZR|1|1a|C|1219
6CZR|1|1a|A|1220
6CZR|1|1a|A|1221
6CZR|1|1a|U|1222
6CZR|1|1a|G|1223
*
6CZR|1|1a|C|1278
6CZR|1|1a|C|1279
6CZR|1|1a|C|1280
6CZR|1|1a|A|1281
6CZR|1|1a|G|1282
6CZR|1|1a|U|1283
6CZR|1|1a|U|1284
6CZR|1|1a|C|1285
*
6CZR|1|1a|G|1316
6CZR|1|1a|C|1317
6CZR|1|1a|C|1318
6CZR|1|1a|G|1319

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx