J3_6CZR_029

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6CZR|1|2A|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_029 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1168

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6CZR|1|2A|U|257
6CZR|1|2A|A|258
6CZR|1|2A|A|259
6CZR|1|2A|A|260
6CZR|1|2A|C|261
*
6CZR|1|2A|G|281
6CZR|1|2A|G|282
6CZR|1|2A|G|283
6CZR|1|2A|U|284
6CZR|1|2A|C|285
6CZR|1|2A|G|286
6CZR|1|2A|U|287
6CZR|1|2A|G|288
*
6CZR|1|2A|C|395
6CZR|1|2A|G|396

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9