J3_6CZR_055

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_055 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1027

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6CZR|1|1A|G|1469
6CZR|1|1A|G|1470
6CZR|1|1A|G|1471
6CZR|1|1A|A|1472
6CZR|1|1A|C|1473
6CZR|1|1A|G|1474
*
6CZR|1|1A|C|1610
6CZR|1|1A|C|1611
*
6CZR|1|1A|G|1614
6CZR|1|1A|A|1615
6CZR|1|1A|A|1616
6CZR|1|1A|A|1617
6CZR|1|1A|A|1618
6CZR|1|1A|G|1619
6CZR|1|1A|C|1620

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2