J3_6CZR_059

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGGCC*GGCUAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98561.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6CZR|1|1a|C|570
6CZR|1|1a|G|571
6CZR|1|1a|G|572
6CZR|1|1a|C|573
6CZR|1|1a|C|574
*
6CZR|1|1a|G|633
6CZR|1|1a|G|634
6CZR|1|1a|C|635
6CZR|1|1a|U|636
6CZR|1|1a|A|637
6CZR|1|1a|G|638
*
6CZR|1|1a|C|738
6CZR|1|1a|G|739

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1h

30S ribosomal protein S8

Chain 1l

30S ribosomal protein S12

Chain 1o

30S ribosomal protein S15

Chain 1q

30S ribosomal protein S17