J3_6DDD_002
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGUUACUAACG*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_002 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.1894
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6DDD|1|1|A|56
6DDD|1|1|C|57
6DDD|1|1|G|58
6DDD|1|1|U|59
6DDD|1|1|U|60
6DDD|1|1|A|61
6DDD|1|1|C|62
6DDD|1|1|U|63
6DDD|1|1|A|64
6DDD|1|1|A|65
6DDD|1|1|C|66
6DDD|1|1|G|67
*
6DDD|1|1|U|74
6DDD|1|1|G|75
6DDD|1|1|C|76
*
6DDD|1|1|G|109
6DDD|1|1|A|110
6DDD|1|1|U|111
6DDD|1|1|U|112
6DDD|1|1|U|113
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L23
- Chain K
- 50S ribosomal protein L29
- Chain P
- 50S ribosomal protein L34
Coloring options: