J3_6DDD_003

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6DDD|1|1|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1562

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|C|272
6DDD|1|1|A|273
6DDD|1|1|A|274
6DDD|1|1|A|275
6DDD|1|1|C|276
*
6DDD|1|1|G|295
6DDD|1|1|G|296
6DDD|1|1|G|297
6DDD|1|1|U|298
6DDD|1|1|U|299
6DDD|1|1|G|300
6DDD|1|1|U|301
6DDD|1|1|A|302
*
6DDD|1|1|U|415
6DDD|1|1|G|416

Current chains

Chain 1

23S rRNA

Nearby chains