J3_6DDD_004

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6DDD|1|1|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0992

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6DDD|1|1|U|728
6DDD|1|1|G|729
6DDD|1|1|A|730
6DDD|1|1|U|731
6DDD|1|1|C|732
6DDD|1|1|U|733
6DDD|1|1|A|734
*
6DDD|1|1|U|818
6DDD|1|1|A|819
6DDD|1|1|G|820
*
6DDD|1|1|C|836
6DDD|1|1|G|837
6DDD|1|1|A|838
6DDD|1|1|A|839

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain P

50S ribosomal protein L34