J3_6DDD_006

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1017

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6DDD|1|1|C|1335
6DDD|1|1|G|1336
6DDD|1|1|A|1337
6DDD|1|1|U|1338
6DDD|1|1|U|1339
6DDD|1|1|G|1340
*
6DDD|1|1|C|1669
6DDD|1|1|A|1670
6DDD|1|1|A|1671
*
6DDD|1|1|U|1683
6DDD|1|1|A|1684
6DDD|1|1|A|1685
6DDD|1|1|G|1686

Current chains

Chain 1

23S rRNA

Nearby chains