J3_6DDD_009

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_009 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.2009

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|U|2118
6DDD|1|1|U|2119
6DDD|1|1|G|2120
*
6DDD|1|1|C|2223
6DDD|1|1|U|2224
6DDD|1|1|A|2225
6DDD|1|1|A|2226
6DDD|1|1|C|2227
6DDD|1|1|C|2228
*
6DDD|1|1|G|2249
6DDD|1|1|A|2250
6DDD|1|1|G|2251
6DDD|1|1|A|2252
6DDD|1|1|C|2253
6DDD|1|1|A|2254
6DDD|1|1|G|2255

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain J

50S ribosomal protein L28