J3_6DDD_017

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUAAG*CGCAAAC*GUAGU

Length

18 nucleotides

Bulged bases

6DDD|1|1|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|A|1341
6DDD|1|1|C|1342
6DDD|1|1|U|1343
6DDD|1|1|A|1344
6DDD|1|1|A|1345
6DDD|1|1|G|1346
*
6DDD|1|1|C|1649
6DDD|1|1|G|1650
6DDD|1|1|C|1651
6DDD|1|1|A|1652
6DDD|1|1|A|1653
6DDD|1|1|A|1654
6DDD|1|1|C|1655
*
6DDD|1|1|G|1664
6DDD|1|1|U|1665
6DDD|1|1|A|1666
6DDD|1|1|G|1667
6DDD|1|1|U|1668

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L34