J3_6DDD_019
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6DDD|1|1|U|2417, 6DDD|1|1|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_019 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1209
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6DDD|1|1|G|2309
6DDD|1|1|C|2310
6DDD|1|1|U|2311
*
6DDD|1|1|A|2411
6DDD|1|1|C|2412
6DDD|1|1|U|2413
6DDD|1|1|U|2414
6DDD|1|1|A|2415
6DDD|1|1|G|2416
6DDD|1|1|U|2417
6DDD|1|1|G|2418
6DDD|1|1|A|2419
6DDD|1|1|U|2420
6DDD|1|1|C|2421
6DDD|1|1|C|2422
*
6DDD|1|1|G|2448
6DDD|1|1|C|2449
6DDD|1|1|U|2450
6DDD|1|1|C|2451
6DDD|1|1|A|2452
6DDD|1|1|A|2453
6DDD|1|1|C|2454
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L27
- Chain O
- 50S ribosomal protein L33
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
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