J3_6DDD_020

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACUAUAG*CGUCGAUGGUAG*CGCUAGAGUAGAACGUU

Length

39 nucleotides

Bulged bases

6DDD|1|2|U|10, 6DDD|1|2|U|12, 6DDD|1|2|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|2|G|5
6DDD|1|2|U|6
6DDD|1|2|G|7
6DDD|1|2|A|8
6DDD|1|2|C|9
6DDD|1|2|U|10
6DDD|1|2|A|11
6DDD|1|2|U|12
6DDD|1|2|A|13
6DDD|1|2|G|14
*
6DDD|1|2|C|66
6DDD|1|2|G|67
6DDD|1|2|U|68
6DDD|1|2|C|69
6DDD|1|2|G|70
6DDD|1|2|A|71
6DDD|1|2|U|72
6DDD|1|2|G|73
6DDD|1|2|G|74
6DDD|1|2|U|75
6DDD|1|2|A|76
6DDD|1|2|G|77
*
6DDD|1|2|C|92
6DDD|1|2|G|93
6DDD|1|2|C|94
6DDD|1|2|U|95
6DDD|1|2|A|96
6DDD|1|2|G|97
6DDD|1|2|A|98
6DDD|1|2|G|99
6DDD|1|2|U|100
6DDD|1|2|A|101
6DDD|1|2|G|102
6DDD|1|2|A|103
6DDD|1|2|A|104
6DDD|1|2|C|105
6DDD|1|2|G|106
6DDD|1|2|U|107
6DDD|1|2|U|108

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L25

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16

Chain a

50S ribosomal protein L18