J3_6DDG_019

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACUAUAG*CGUCGAUGGUAG*CGCUAGAGUAGAACGUU

Length

39 nucleotides

Bulged bases

6DDG|1|2|U|10, 6DDG|1|2|U|12, 6DDG|1|2|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|2|G|5
6DDG|1|2|U|6
6DDG|1|2|G|7
6DDG|1|2|A|8
6DDG|1|2|C|9
6DDG|1|2|U|10
6DDG|1|2|A|11
6DDG|1|2|U|12
6DDG|1|2|A|13
6DDG|1|2|G|14
*
6DDG|1|2|C|66
6DDG|1|2|G|67
6DDG|1|2|U|68
6DDG|1|2|C|69
6DDG|1|2|G|70
6DDG|1|2|A|71
6DDG|1|2|U|72
6DDG|1|2|G|73
6DDG|1|2|G|74
6DDG|1|2|U|75
6DDG|1|2|A|76
6DDG|1|2|G|77
*
6DDG|1|2|C|92
6DDG|1|2|G|93
6DDG|1|2|C|94
6DDG|1|2|U|95
6DDG|1|2|A|96
6DDG|1|2|G|97
6DDG|1|2|A|98
6DDG|1|2|G|99
6DDG|1|2|U|100
6DDG|1|2|A|101
6DDG|1|2|G|102
6DDG|1|2|A|103
6DDG|1|2|A|104
6DDG|1|2|C|105
6DDG|1|2|G|106
6DDG|1|2|U|107
6DDG|1|2|U|108

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L25

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16

Chain a

50S ribosomal protein L18