J3_6DZI_003

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

6DZI|1|A|U|801, 6DZI|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1575

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6DZI|1|A|U|798
6DZI|1|A|G|799
6DZI|1|A|A|800
6DZI|1|A|U|801
6DZI|1|A|C|802
6DZI|1|A|U|803
6DZI|1|A|A|804
*
6DZI|1|A|U|888
6DZI|1|A|A|889
6DZI|1|A|G|890
*
6DZI|1|A|C|906
6DZI|1|A|A|907
6DZI|1|A|A|908
6DZI|1|A|A|909

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34