J3_6DZI_007

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6DZI|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1476

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|A|C|1421
6DZI|1|A|A|1422
6DZI|1|A|A|1423
6DZI|1|A|G|1424
*
6DZI|1|A|C|1823
6DZI|1|A|C|1824
6DZI|1|A|C|1825
6DZI|1|A|A|1826
6DZI|1|A|A|1827
6DZI|1|A|A|1828
6DZI|1|A|C|1829
*
6DZI|1|A|G|1838
6DZI|1|A|U|1839
6DZI|1|A|G|1840

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain d

50S ribosomal protein L34