J3_6DZI_017
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 6DZI|1|h|A|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_017 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.1726
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6DZI|1|h|U|566
6DZI|1|h|G|567
6DZI|1|h|G|568
*
6DZI|1|h|C|631
6DZI|1|h|U|632
6DZI|1|h|A|633
6DZI|1|h|G|634
*
6DZI|1|h|C|734
6DZI|1|h|G|735
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 5
- 30S ribosomal protein S17
- Chain q
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S12
- Chain x
- 30S ribosomal protein S15
Coloring options: