J3_6DZI_025
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UGU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 6DZI|1|h|U|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_025 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.3283
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DZI|1|h|U|1096
6DZI|1|h|G|1097
6DZI|1|h|U|1098
*
6DZI|1|h|A|1136
6DZI|1|h|G|1137
6DZI|1|h|A|1138
6DZI|1|h|C|1139
*
6DZI|1|h|G|1162
6DZI|1|h|G|1163
6DZI|1|h|U|1164
6DZI|1|h|G|1165
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 4
- 30S ribosomal protein S9
- Chain 8
- 30S ribosomal protein S2
- Chain 9
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S10
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