J3_6DZI_031

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAGGUUG*CACCCUUGAAAG*CAC

Length

23 nucleotides

Bulged bases

6DZI|1|A|U|1178, 6DZI|1|A|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|G|1173
6DZI|1|A|G|1174
6DZI|1|A|A|1175
6DZI|1|A|G|1176
6DZI|1|A|G|1177
6DZI|1|A|U|1178
6DZI|1|A|U|1179
6DZI|1|A|G|1180
*
6DZI|1|A|C|1194
6DZI|1|A|A|1195
6DZI|1|A|C|1196
6DZI|1|A|C|1197
6DZI|1|A|C|1198
6DZI|1|A|U|1199
6DZI|1|A|U|1200
6DZI|1|A|G|1201
6DZI|1|A|A|1202
6DZI|1|A|A|1203
6DZI|1|A|A|1204
6DZI|1|A|G|1205
*
6DZI|1|A|C|1220
6DZI|1|A|A|1221
6DZI|1|A|C|1222

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25

Chain f

50S ribosomal protein L36