J3_6DZI_034

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_034 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.255

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6DZI|1|A|U|1646
6DZI|1|A|G|1647
6DZI|1|A|A|1648
6DZI|1|A|C|1649
6DZI|1|A|G|1650
*
6DZI|1|A|C|1784
6DZI|1|A|C|1785
*
6DZI|1|A|G|1788
6DZI|1|A|A|1789
6DZI|1|A|A|1790
6DZI|1|A|A|1791
6DZI|1|A|A|1792
6DZI|1|A|G|1793

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2