J3_6DZI_035
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6DZI|1|A|U|2614, 6DZI|1|A|A|2650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_035 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1282
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6DZI|1|A|G|2506
6DZI|1|A|C|2507
6DZI|1|A|C|2508
*
6DZI|1|A|G|2608
6DZI|1|A|A|2609
6DZI|1|A|C|2610
6DZI|1|A|U|2611
6DZI|1|A|A|2612
6DZI|1|A|G|2613
6DZI|1|A|U|2614
6DZI|1|A|G|2615
6DZI|1|A|A|2616
6DZI|1|A|U|2617
6DZI|1|A|C|2618
6DZI|1|A|C|2619
*
6DZI|1|A|G|2645
6DZI|1|A|C|2646
6DZI|1|A|U|2647
6DZI|1|A|C|2648
6DZI|1|A|A|2649
6DZI|1|A|A|2650
6DZI|1|A|C|2651
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33 2
- Chain e
- 50S ribosomal protein L35
Coloring options: