J3_6DZK_005

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAG*CUAC*GGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZK|1|A|C|925
6DZK|1|A|G|926
6DZK|1|A|G|927
6DZK|1|A|A|928
6DZK|1|A|G|929
*
6DZK|1|A|C|1215
6DZK|1|A|U|1216
6DZK|1|A|A|1217
6DZK|1|A|C|1218
*
6DZK|1|A|G|1319
6DZK|1|A|G|1320
6DZK|1|A|A|1321
6DZK|1|A|G|1322

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13

Chain Y

Ribosome hibernation promoting factor