J3_6DZK_006
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 6DZK|1|A|A|957, 6DZK|1|A|G|958
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZK_006 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1682
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6DZK|1|A|A|937
6DZK|1|A|U|938
6DZK|1|A|U|939
6DZK|1|A|A|940
6DZK|1|A|A|941
6DZK|1|A|U|942
6DZK|1|A|U|943
6DZK|1|A|C|944
*
6DZK|1|A|G|955
6DZK|1|A|A|956
6DZK|1|A|A|957
6DZK|1|A|G|958
6DZK|1|A|A|959
6DZK|1|A|A|960
6DZK|1|A|C|961
6DZK|1|A|C|962
6DZK|1|A|U|963
6DZK|1|A|U|964
6DZK|1|A|A|965
6DZK|1|A|C|966
*
6DZK|1|A|G|1202
6DZK|1|A|G|1203
6DZK|1|A|C|1204
6DZK|1|A|U|1205
6DZK|1|A|U|1206
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain Y
- Ribosome hibernation promoting factor
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