J3_6DZK_011

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUC*GAGAC*GGUG

Length

13 nucleotides

Bulged bases

6DZK|1|A|U|1164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZK|1|A|U|1096
6DZK|1|A|G|1097
6DZK|1|A|U|1098
6DZK|1|A|C|1099
*
6DZK|1|A|G|1135
6DZK|1|A|A|1136
6DZK|1|A|G|1137
6DZK|1|A|A|1138
6DZK|1|A|C|1139
*
6DZK|1|A|G|1162
6DZK|1|A|G|1163
6DZK|1|A|U|1164
6DZK|1|A|G|1165

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14

Chain V

30S ribosomal protein S2