J3_6DZK_021
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 6DZK|1|A|U|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZK_021 not in the Motif Atlas
- Geometric match to J3_5J7L_010
- Geometric discrepancy: 0.2379
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DZK|1|A|U|1096
6DZK|1|A|G|1097
6DZK|1|A|U|1098
*
6DZK|1|A|A|1136
6DZK|1|A|G|1137
6DZK|1|A|A|1138
6DZK|1|A|C|1139
*
6DZK|1|A|G|1162
6DZK|1|A|G|1163
6DZK|1|A|U|1164
6DZK|1|A|G|1165
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
- Chain V
- 30S ribosomal protein S2
Coloring options: