J3_6DZP_003

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

6DZP|1|A|U|801, 6DZP|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZP_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1575

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|U|798
6DZP|1|A|G|799
6DZP|1|A|A|800
6DZP|1|A|U|801
6DZP|1|A|C|802
6DZP|1|A|U|803
6DZP|1|A|A|804
*
6DZP|1|A|U|888
6DZP|1|A|A|889
6DZP|1|A|G|890
*
6DZP|1|A|C|906
6DZP|1|A|A|907
6DZP|1|A|A|908
6DZP|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34