J3_6DZP_019

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

ACCUAUCUUUC*GAGG*CUUGAUGGUGUU

Length

27 nucleotides

Bulged bases

6DZP|1|A|U|330, 6DZP|1|A|U|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|A|322
6DZP|1|A|C|323
6DZP|1|A|C|324
6DZP|1|A|U|325
6DZP|1|A|A|326
6DZP|1|A|U|327
6DZP|1|A|C|328
6DZP|1|A|U|329
6DZP|1|A|U|330
6DZP|1|A|U|331
6DZP|1|A|C|332
*
6DZP|1|A|G|349
6DZP|1|A|A|350
6DZP|1|A|G|351
6DZP|1|A|G|352
*
6DZP|1|A|C|443
6DZP|1|A|U|444
6DZP|1|A|U|445
6DZP|1|A|G|446
6DZP|1|A|A|447
6DZP|1|A|U|448
6DZP|1|A|G|449
6DZP|1|A|G|450
6DZP|1|A|U|451
6DZP|1|A|G|452
6DZP|1|A|U|453
6DZP|1|A|U|454

Current chains

Chain A

23S rRNA

Nearby chains