J3_6DZP_026

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

6DZP|1|A|U|318, 6DZP|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|G|317
6DZP|1|A|U|318
6DZP|1|A|G|319
*
6DZP|1|A|C|457
6DZP|1|A|G|458
6DZP|1|A|A|459
6DZP|1|A|G|460
6DZP|1|A|U|461
6DZP|1|A|A|462
6DZP|1|A|G|463
*
6DZP|1|A|U|487
6DZP|1|A|G|488
6DZP|1|A|A|489
6DZP|1|A|A|490
6DZP|1|A|U|491
6DZP|1|A|C|492

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28