J3_6EM1_010
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGACAUG*UGGG*CAUAAU
- Length
- 17 nucleotides
- Bulged bases
- 6EM1|1|1|C|439, 6EM1|1|1|U|620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|A|436
6EM1|1|1|G|437
6EM1|1|1|A|438
6EM1|1|1|C|439
6EM1|1|1|A|440
6EM1|1|1|U|441
6EM1|1|1|G|442
*
6EM1|1|1|U|492
6EM1|1|1|G|493
6EM1|1|1|G|494
6EM1|1|1|G|495
*
6EM1|1|1|C|618
6EM1|1|1|A|619
6EM1|1|1|U|620
6EM1|1|1|A|621
6EM1|1|1|A|622
6EM1|1|1|U|623
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain E
- 60S ribosomal protein L6-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain x
- Ribosome production factor 1
Coloring options: