J3_6EM1_011

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

6EM1|1|2|U|60, 6EM1|1|2|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EM1_011 not in the Motif Atlas

Homologous match to J3_8P9A_067

Geometric discrepancy: 0.1019

The information below is about J3_8P9A_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6EM1|1|2|A|44
6EM1|1|2|C|45
*
6EM1|1|2|G|58
6EM1|1|2|A|59
6EM1|1|2|U|60
6EM1|1|2|A|61
6EM1|1|2|C|62
6EM1|1|2|G|63
6EM1|1|2|U|64
*
6EM1|1|2|A|96
6EM1|1|2|A|97
6EM1|1|2|U|98
6EM1|1|2|C|99
6EM1|1|2|U|100

Current chains

Chain 2

5.8S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A

Chain v

Nucleolar protein 16