J3_6FAI_009

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6FAI|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|C|1215
6FAI|1|2|C|1216
6FAI|1|2|A|1217
6FAI|1|2|G|1218
6FAI|1|2|A|1219
6FAI|1|2|C|1220
*
6FAI|1|2|G|1263
6FAI|1|2|G|1264
6FAI|1|2|G|1265
6FAI|1|2|U|1266
6FAI|1|2|G|1267
*
6FAI|1|2|U|1442
6FAI|1|2|U|1443
6FAI|1|2|A|1444
6FAI|1|2|G|1445
6FAI|1|2|A|1446
6FAI|1|2|C|1447
6FAI|1|2|G|1448

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain i

Essential nuclear protein 1

Chain k

Ribosome biogenesis protein TSR1