J3_6FAI_010

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

6FAI|1|2|U|1285, 6FAI|1|2|A|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|U|1283
6FAI|1|2|C|1284
6FAI|1|2|U|1285
6FAI|1|2|U|1286
6FAI|1|2|A|1287
6FAI|1|2|G|1288
*
6FAI|1|2|C|1327
6FAI|1|2|G|1328
6FAI|1|2|A|1329
6FAI|1|2|G|1330
6FAI|1|2|A|1331
6FAI|1|2|C|1332
*
6FAI|1|2|G|1419
6FAI|1|2|C|1420
6FAI|1|2|A|1421
6FAI|1|2|A|1422
6FAI|1|2|U|1423
6FAI|1|2|A|1424

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A