J3_6FAI_014

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6FAI|1|2|A|217, 6FAI|1|2|C|239, 6FAI|1|2|U|240, 6FAI|1|2|U|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|A|213
6FAI|1|2|G|214
6FAI|1|2|A|215
6FAI|1|2|U|216
6FAI|1|2|A|217
6FAI|1|2|A|218
6FAI|1|2|A|219
6FAI|1|2|A|220
6FAI|1|2|A|221
6FAI|1|2|A|222
6FAI|1|2|U|223
6FAI|1|2|C|224
6FAI|1|2|A|225
6FAI|1|2|A|226
6FAI|1|2|U|227
6FAI|1|2|G|228
*
6FAI|1|2|C|237
6FAI|1|2|U|238
6FAI|1|2|C|239
6FAI|1|2|U|240
6FAI|1|2|U|241
6FAI|1|2|U|242
6FAI|1|2|G|243
*
6FAI|1|2|C|250
6FAI|1|2|A|251
6FAI|1|2|U|252

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A