J3_6FKR_016
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FKR_016 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.089
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6FKR|1|1a|G|46
6FKR|1|1a|C|47
*
6FKR|1|1a|G|361
6FKR|1|1a|G|362
6FKR|1|1a|A|363
6FKR|1|1a|A|364
6FKR|1|1a|U|365
6FKR|1|1a|C|366
6FKR|1|1a|U|367
*
6FKR|1|1a|A|393
6FKR|1|1a|G|394
6FKR|1|1a|C|395
Current chains
- Chain 1a
- 16 ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
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