J3_6FKR_026

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_026 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1208

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6FKR|1|1a|U|1073
6FKR|1|1a|G|1074
*
6FKR|1|1a|U|1083
6FKR|1|1a|G|1084
6FKR|1|1a|U|1085
6FKR|1|1a|U|1086
6FKR|1|1a|G|1087
*
6FKR|1|1a|C|1098
6FKR|1|1a|G|1099
6FKR|1|1a|C|1100
6FKR|1|1a|A|1101
6FKR|1|1a|A|1102

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1e

30S ribosomal protein S5