J3_6FKR_033

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_033 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0673

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6FKR|1|2A|C|698
6FKR|1|2A|A|699
6FKR|1|2A|G|700
*
6FKR|1|2A|C|732
6FKR|1|2A|G|733
6FKR|1|2A|A|734
6FKR|1|2A|A|735
6FKR|1|2A|C|736
*
6FKR|1|2A|G|760
6FKR|1|2A|A|761
6FKR|1|2A|U|762
6FKR|1|2A|G|763

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2