J3_6FKR_052

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_052 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.3336

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2a|G|1002
6FKR|1|2a|G|1003
6FKR|1|2a|A|1004
6FKR|1|2a|A|1005
6FKR|1|2a|C|1006
*
6FKR|1|2a|G|1023
6FKR|1|2a|G|1024
6FKR|1|2a|U|1025
6FKR|1|2a|G|1026
6FKR|1|2a|C|1027
6FKR|1|2a|C|1028
*
6FKR|1|2a|G|1033
6FKR|1|2a|G|1034
6FKR|1|2a|A|1035
6FKR|1|2a|G|1036
6FKR|1|2a|C|1037
6FKR|1|2a|C|1038

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains