J3_6FKR_073

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGC*GUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2a|U|1073
6FKR|1|2a|G|1074
6FKR|1|2a|C|1075
*
6FKR|1|2a|G|1082
6FKR|1|2a|U|1083
6FKR|1|2a|G|1084
6FKR|1|2a|U|1085
6FKR|1|2a|U|1086
6FKR|1|2a|G|1087
*
6FKR|1|2a|C|1098
6FKR|1|2a|G|1099
6FKR|1|2a|C|1100
6FKR|1|2a|A|1101
6FKR|1|2a|A|1102

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5