J3_6FT6_019

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAGUG*CAA*UCUAG

Length

16 nucleotides

Bulged bases

6FT6|1|1|A|1482, 6FT6|1|1|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FT6|1|1|C|1478
6FT6|1|1|U|1479
6FT6|1|1|G|1480
6FT6|1|1|A|1481
6FT6|1|1|A|1482
6FT6|1|1|G|1483
6FT6|1|1|U|1484
6FT6|1|1|G|1485
*
6FT6|1|1|C|1857
6FT6|1|1|A|1858
6FT6|1|1|A|1859
*
6FT6|1|1|U|1871
6FT6|1|1|C|1872
6FT6|1|1|U|1873
6FT6|1|1|A|1874
6FT6|1|1|G|1875

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain b

Nucleolar GTP-binding protein 1

Chain d

60S ribosomal protein L31-A

Chain g

60S ribosomal protein L34-A