J3_6FT6_020

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAG*CUGAUAAC*GUC

Length

16 nucleotides

Bulged bases

6FT6|1|1|U|1840, 6FT6|1|1|A|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FT6|1|1|G|1488
6FT6|1|1|A|1489
6FT6|1|1|A|1490
6FT6|1|1|A|1491
6FT6|1|1|G|1492
*
6FT6|1|1|C|1836
6FT6|1|1|U|1837
6FT6|1|1|G|1838
6FT6|1|1|A|1839
6FT6|1|1|U|1840
6FT6|1|1|A|1841
6FT6|1|1|A|1842
6FT6|1|1|C|1843
*
6FT6|1|1|G|1852
6FT6|1|1|U|1853
6FT6|1|1|C|1854

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39