J3_6FT6_025
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCACACAAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUUGCGUGG
- Length
- 50 nucleotides
- Bulged bases
- 6FT6|1|1|A|3172, 6FT6|1|1|G|3173, 6FT6|1|1|A|3215, 6FT6|1|1|G|3216, 6FT6|1|1|C|3217, 6FT6|1|1|G|3219, 6FT6|1|1|A|3268, 6FT6|1|1|U|3270, 6FT6|1|1|C|3272, 6FT6|1|1|U|3275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FT6|1|1|C|3161
6FT6|1|1|C|3162
6FT6|1|1|A|3163
6FT6|1|1|C|3164
6FT6|1|1|A|3165
6FT6|1|1|C|3166
6FT6|1|1|A|3167
6FT6|1|1|A|3168
6FT6|1|1|U|3169
6FT6|1|1|A|3170
6FT6|1|1|U|3171
6FT6|1|1|A|3172
6FT6|1|1|G|3173
6FT6|1|1|A|3174
6FT6|1|1|U|3175
6FT6|1|1|G|3176
*
6FT6|1|1|C|3212
6FT6|1|1|A|3213
6FT6|1|1|U|3214
6FT6|1|1|A|3215
6FT6|1|1|G|3216
6FT6|1|1|C|3217
6FT6|1|1|A|3218
6FT6|1|1|G|3219
6FT6|1|1|G|3220
*
6FT6|1|1|C|3265
6FT6|1|1|G|3266
6FT6|1|1|A|3267
6FT6|1|1|A|3268
6FT6|1|1|U|3269
6FT6|1|1|U|3270
6FT6|1|1|G|3271
6FT6|1|1|C|3272
6FT6|1|1|A|3273
6FT6|1|1|A|3274
6FT6|1|1|U|3275
6FT6|1|1|G|3276
6FT6|1|1|U|3277
6FT6|1|1|C|3278
6FT6|1|1|A|3279
6FT6|1|1|U|3280
6FT6|1|1|U|3281
6FT6|1|1|U|3282
6FT6|1|1|U|3283
6FT6|1|1|G|3284
6FT6|1|1|C|3285
6FT6|1|1|G|3286
6FT6|1|1|U|3287
6FT6|1|1|G|3288
6FT6|1|1|G|3289
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: