J3_6FT6_027

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

6FT6|1|3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FT6|1|3|C|9
6FT6|1|3|C|10
6FT6|1|3|A|11
6FT6|1|3|U|12
6FT6|1|3|A|13
6FT6|1|3|U|14
*
6FT6|1|3|A|66
6FT6|1|3|G|67
6FT6|1|3|C|68
*
6FT6|1|3|G|110
6FT6|1|3|U|111
6FT6|1|3|G|112

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L5

Chain v

Ribosome biogenesis protein RPF2