J3_6FTI_003

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGCAGUC*GUGC*GACGUC

Length

18 nucleotides

Bulged bases

6FTI|1|u|G|703

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTI|1|u|G|448
6FTI|1|u|C|449
6FTI|1|u|G|450
6FTI|1|u|C|451
6FTI|1|u|A|452
6FTI|1|u|G|453
6FTI|1|u|U|454
6FTI|1|u|C|455
*
6FTI|1|u|G|701
6FTI|1|u|U|702
6FTI|1|u|G|703
6FTI|1|u|C|704
*
6FTI|1|u|G|1293
6FTI|1|u|A|1294
6FTI|1|u|C|1295
6FTI|1|u|G|1296
6FTI|1|u|U|1297
6FTI|1|u|C|1298

Current chains

Chain u

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28