J3_6FTI_012
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6FTI|1|u|U|4117, 6FTI|1|u|U|4118, 6FTI|1|u|G|4121
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTI_012 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3721
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6FTI|1|u|G|4091
6FTI|1|u|G|4092
6FTI|1|u|G|4093
6FTI|1|u|G|4094
*
6FTI|1|u|C|4114
6FTI|1|u|G|4115
6FTI|1|u|C|4116
6FTI|1|u|U|4117
6FTI|1|u|U|4118
6FTI|1|u|C|4119
6FTI|1|u|U|4120
6FTI|1|u|G|4121
6FTI|1|u|G|4122
6FTI|1|u|C|4123
6FTI|1|u|G|4124
6FTI|1|u|C|4125
6FTI|1|u|C|4126
6FTI|1|u|A|4127
6FTI|1|u|A|4128
6FTI|1|u|G|4129
*
6FTI|1|u|C|4155
6FTI|1|u|G|4156
6FTI|1|u|A|4157
6FTI|1|u|C|4158
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- Ribosomal protein L37a
Coloring options: