J3_6FTI_022

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAGGAC*GCUAAGG*CACCUGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTI|1|u|G|1965
6FTI|1|u|C|1966
6FTI|1|u|A|1967
6FTI|1|u|G|1968
6FTI|1|u|G|1969
6FTI|1|u|A|1970
6FTI|1|u|C|1971
*
6FTI|1|u|G|1995
6FTI|1|u|C|1996
6FTI|1|u|U|1997
6FTI|1|u|A|1998
6FTI|1|u|A|1999
6FTI|1|u|G|2000
6FTI|1|u|G|2001
*
6FTI|1|u|C|2016
6FTI|1|u|A|2017
6FTI|1|u|C|2018
6FTI|1|u|C|2019
6FTI|1|u|U|2020
6FTI|1|u|G|2021
6FTI|1|u|C|2022

Current chains

Chain u

28S rRNA

Nearby chains

Chain m

eL40

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12