J3_6FTJ_022

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCAGGAC*GCUAAGG*CACCUGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTJ|1|u|G|1965
6FTJ|1|u|C|1966
6FTJ|1|u|A|1967
6FTJ|1|u|G|1968
6FTJ|1|u|G|1969
6FTJ|1|u|A|1970
6FTJ|1|u|C|1971
*
6FTJ|1|u|G|1995
6FTJ|1|u|C|1996
6FTJ|1|u|U|1997
6FTJ|1|u|A|1998
6FTJ|1|u|A|1999
6FTJ|1|u|G|2000
6FTJ|1|u|G|2001
*
6FTJ|1|u|C|2016
6FTJ|1|u|A|2017
6FTJ|1|u|C|2018
6FTJ|1|u|C|2019
6FTJ|1|u|U|2020
6FTJ|1|u|G|2021
6FTJ|1|u|C|2022

Current chains

Chain u

28S rRNA

Nearby chains

Chain m

eL40

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12