J3_6FTJ_024

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

6FTJ|1|u|C|2768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTJ|1|u|G|2549
6FTJ|1|u|G|2550
6FTJ|1|u|A|2551
6FTJ|1|u|G|2552
6FTJ|1|u|A|2553
6FTJ|1|u|U|2554
6FTJ|1|u|G|2555
*
6FTJ|1|u|C|2572
6FTJ|1|u|A|2573
6FTJ|1|u|G|2574
6FTJ|1|u|U|2575
*
6FTJ|1|u|A|2757
6FTJ|1|u|G|2758
6FTJ|1|u|G|2759
6FTJ|1|u|G|2760
6FTJ|1|u|U|2761
6FTJ|1|u|G|2762
6FTJ|1|u|U|2763
6FTJ|1|u|A|2764
6FTJ|1|u|A|2765
6FTJ|1|u|A|2766
6FTJ|1|u|U|2767
6FTJ|1|u|C|2768
6FTJ|1|u|U|2769
6FTJ|1|u|C|2770

Current chains

Chain u

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

eL34